Evaluation and selection of highly antagonistic Bacillus strains for the development of probiotic formulations
Abstract
The relevance of this article is driven by the global challenge of identifying and developing alternative biolog i cal preparations to antibiotics – formulations that are affordable, effective, and natural – for maintaining a stable epizootic situation in poultry farming and reducing epidemic risks to humans within the framework of the “One Health” strategy. Accordingly, the materials presented in this study aim to identify, through in vitro screening, B a cillus strains isolated from quails that exhibit ed very high levels of antagonistic activity against both Gram-negative and Gram-positive indicator test cultures: Ps eudomonas aeruginosa ATCC 15442, E scherichia coli ATCC 25922, S almonella typhimurium ATCC 29630, and S taphylococcus aureus ATCC 6538. To address this objective, two complementary research methods were employed: the indirect perpendicular streak method and the quantitative delayed antagonism method, applied to experimental strains of B acillus subtilis , B . licheniformis , and B. amylol i quefaciens against the test cultures. Based on the results, 9 strains (7.3% of the 123 Bacillus isolates studied) de m onstrated very high antagonistic activity simultaneously against all indicator test cultures. These included 4 strains (3.3%) of B. subtilis , 4 strains (3.3%) of B. licheniformis , and 1 strain (0.8%) of B. amyloliquefaciens . These 9 Bacillus strains were recognized as promising and selected for further research aimed at developing a synbiotic formulation for quails. The findings of this study have practical value, as the development and application of Baci l lus -based synbiotics – administered as feed additives or via environmental spraying – represent a promising strategy for maintaining a stable epizootic status in poultry farms, improving the sanitary conditions of poultry housing, enhancing intestinal barrier function and immune responsiveness in birds, and enabling a complete transition away from antibiotic use in poultry production.References
Abudabos, A. M., Aljumaah, M. R., Alkhulaifi, M. M., Alabdullatif, A., Suliman, G. M., & R Al Sulaiman, A. (2020). Comparative effects of Bacillus subtilis and Bacillus licheniformis on live performance, blood metabolites and intestinal features in broiler inoculated with Salmonella infection during the finisher phase. Microbial Pathogenesis, 139, 103870.
Ahmat, M., Cheng, J., Abbas, Z., Cheng, Q., Fan, Z., Ahmad, B., Hou, M., Osman, G., Guo, H., Wang, J., & Zhang, R. (2021). Effects of Bacillus amyloliquefaciens LFB112 on growth performance, carcass traits, immune, and serum biochemical response in broiler chickens. Antibiotics, 10(11), 1427.
Aljumaah, M. R., Alkhulaifi, M. M., Abudabos, A. M., Aljumaah, R. S., Alsaleh, A. N., & Stanley, D. (2020). Bacillus subtilis PB6 based probiotic supplementation plays a role in the recovery after the necrotic enteritis challenge. PloS One, 15(6), e0232781.
Anguara, K., Chowdhury, S. D., Roy, B. C., & Shafikul, G. S. M. (2022). Effects of feeding multi-strain probiotics and multi-enzymes to broilers on growth performance. Intestinal morphology and cost effectiveness of production. Advances in Animal and Veterinary Sciences, 10(2), 389–396.
Arif, M., Akteruzzaman, M., Tuhin-Al-Ferdous, Islam, SK. S., Das, B. C., Siddique, M. P., & Kabir, S. M. L. (2021). Dietary supplementation of Bacillus-based probiotics on the growth performance, gut morphology, intestinal microbiota and immune response in low biosecurity broiler chickens. Veterinary and Animal Science, 14, 100216.
Biswas, S., Kim, M. H., Baek, D. H., & Kim, I. H. (2023). Probiotic mixture (Bacillus subtilis and Bacillus licheniformis) a potential in-feed additive to improve broiler production efficiency, nutrient digestibility, caecal microflora, meat quality and to diminish hazardous odour emission. Journal of Animal Physiology and Animal Nutrition, 107(4), 1065–1072.
Bodinga, B. M., Hayat, K. H., Liu, X., Zhou, J., Yang, X., Ismaila, A., Soomro, R. N., Ren, Z., Zhang, W., & Yang, X.-J. (2020). Effects of Bacillus subtilis DSM 32315 on immunity, nutrient transporters and functional diversity of cecal microbiome of broiler chickens in necrotic enteritis challenge. Journal of World’s Poultry Research, 10(3), 527–544.
Boniuk, N. V., Vishchur, O. I., PrudyusТ. Y., Shchebentovska, O. M., & Blishch, H. I. (2024). Morphometric features of enterochromaffin endocrinocytes of the small intestine of piglets receiving prebiotic feed additive. Regulatory Mechanisms in Biosystems, 15(4), 945–950.
Chechet, O. M., Kovalenko, V. L., Horbatyuk, O. I., Gaidei, O. S., Kravtsova, O. L., Andriyashchuk, V. O., Musiets, I. V., & Ordynska, D. O. (2022). Antagonistic properties of a probiotic preparation containing bacteria of the genera Bacillus and Enterococcus. Regulatory Mechanisms in Biosystems, 13(4), 362–366.
Chechet, O. M., Kovalenko, V. L., Vishchur, O. I., Haidei, O. S., Krushelnytska, O. V., & Gutyj, B. V. (2022). Study the effectiveness of using a complex of disinfectants and probiotics in the presence of poultry. Ukrainian Journal of Veterinary and Agricultural Sciences, 5(2), 8–16.
Chemerovska, I. O., & Rublenko, I. O. (2022). The problem of antimicrobial resistance in Ukraine and the world. Scientific Bulletin of Veterinary Medicine, 2, 33–42.
Chemerovska, I., Rublenko, I., Musiets, I., & Horbatyuk, O. (2024). Distribution of pathogenic and opportunistic microorganisms in raw materials and products of animal origin. Scientific Messenger of LNU of Veterinary Medicine and Biotechnologies, Series: Veterinary Sciences, 26(116), 54–63.
Costa, N. D. A., Martins, A. F. L., Guimarães, A. D. B., Capela, A. P. D., Magalhães, I. S., Arruda, T. R., Vieira, É. N. R., & Leite Júnior, B. R. D. C. (2022). Probiotic and paraprobiotic potential of Bacillus coagulans: Impact of processing and storage on viability and resistance in the gastrointestinal tract. Research, Society and Development; 11(8), e26211831013.
Guarner, F., Sanders, M. E., Szajewska, H., Cohen, H., Eliakim, R., Herrerade Guise, C., Karakan, T., Merenstein, D., Piscoya, A., Ramakrishna, B., Salminen, S., & Melberg, J. (2024). World gastroenterology organisation global guidelines: Probiotics and prebiotics. Journal of Clinical Gastroenterology, 58(6), 533–553.
Hernandez-Patlan, D., Solis-Cruz, B., Pontin, K. P., Hernandez-Velasco, X., Merino-Guzman, R., Adhikari, B., López-Arellano, R., Kwon, M. Y., Hargis, B. M., Arreguin-Nava, M. A., Tellez-Isaias, G., & Latorre, J. D. (2019). Impact of a Bacillus direct-fed microbial on growth performance, intestinal barrier integrity, necrotic enteritis lesions, and ileal microbiota in broiler chickens using a laboratory challenge model. Frontiers in Veterinary Science, 6, 108.
Hindle, V. K., Veasley, N. M., & Holscher, H. D. (2025). Microbiota-focused dietary approaches to support health: A systematic review. The Journal of Nutrition, 155(2), 381–401.
Kenakin, T. (2008). What systems can and can't do. British Journal of Pharmacology, 153(5), 841–843.
Konieczka, P., Sandvang, D., Kinsner, M., Szkopek, D., Szyryńska, N., & Jankowski, J. (2022). Bacillus-based probiotics affect gut barrier integrity in different ways in chickens subjected to optimal or challenge conditions. Veterinary Microbiology, 265, 109323.
Lutgendorff, F., Nijmeijer, R. M., Sandström, P. A., Trulsson, L. M., Magnusson, K. E., Timmerman, H. M., van Minnen, L. P., Rijkers, G. T., Gooszen, H. G., Akkermans, L. M., & Söderholm, J. D. (2009). Probiotics prevent intestinal barrier dysfunction in acute pancreatitis in rats via induction of ileal mucosal glutathione biosynthesis. PloS One, 4(2), e4512.
Naeem, M., & Bourassa, D. (2025). Probiotics in Poultry: Unlocking Productivity Through Microbiome Modulation and Gut Health. Microorganisms, 13(2), 257.
Odriozola, A., González, A., Odriozola, I., Álvarez-Herms, J., & Corbi, F. (2024). Microbiome-based precision nutrition: Prebiotics, probiotics and postbiotics. Advances in Genetics, 111, 237–310.
Ogbuewu, I. P., Mabelebele, M., Sebola, N. A., & Mbajiorgu, C. (2022). Bacillus probiotics as alternatives to in-feed antibiotics and its influence on growth, serum chemistry, antioxidant status, intestinal histomorphology, and lesion scores in disease-challenged broiler chickens. Frontiers in Veterinary Science, 9, 876725.
Qiu, K., Li, C.-I., Wang, J., Qi, G.-H., Gao, J., Zhang, H.-J., & Wu, S.-G. (2021). Effects of dietary supplementation with Bacillus subtilis, as an alternative to antibiotics, on growth performance, serum immunity, and intestinal health in broiler chickens. Frontiers in Nutrition, 8, 786878.
Ramlucken, U., Lalloo, R., Roets, Y., Moonsamy, G., Jansen van Rensburg, C., & Thantsha, M. S. (2020). Advantages of Bacillus-based probiotics in poultry production. Livestock Science, 241, 104215.
Ruvalcaba-Gómez, J. M., Villagrán, Z., Valdez-Alarcón, J. J., Martínez-Núñez, M., Gomez-Godínez, L. J., Ruesga-Gutiérrez, E., Anaya-Esparza, L. M., Arteaga-Garibay, R. I., & Villarruel-López, A. (2022). Non-antibiotics strategies to control Salmonella infection in poultry. Animals, 12(1), 102.
Safronova, L., Pylypiuk, Y., Skorochod, I., & Polova, Z. (2024). Probiotics and their potential for the prevention and treatment of infections. Mikrobiolohichnyi Zhurnal, 86(6), 74–91.
Shkromada, O. I., Fotina, T. I., Fotina, H. A., Nechyporenko, O. L., Petrov, R. V., & Fotin, A. I. (2022). Effect of Bacillus subtilis on pigs on weaning. Bulletin of Sumy National Agrarian University, Veterinary Medicine, 56, 51–57.
Vinderola, G., Sanders, M. E., Salminen, S. (2022). The concept of postbiotics. Foods, 11(8), 1077.
Wang, Y., Heng, C., Zhou, X., Cao, G., Jiang, L., Wang, J., Li, K., Wang, D., & Zhan, X. (2021). Supplemental Bacillus subtilis DSM 29784 and enzymes, alone or in combination, as alternatives for antibiotics to improve growth performance, digestive enzyme activity, anti-oxidative status, immune response and the intestinal barrier of broiler chickens. The British Journal of Nutrition, 125(5), 494–507.
Xiao, X., Qin, S., Cui, T., Liu, J., Wu, Y., Zhong, Y., & Yang, C. (2024). Bacillus licheniformis suppresses Clostridium perfringens infection via modulating inflammatory response, antioxidant status, inflammasome activation and microbial homeostasis in broilers. Poultry Science, 103(11), 104222.
Xu, Y., Yu, Y., Shen, Y., Li, Q., Lan, J., Wu, Y., Zhang, R., Cao, G., & Yang, C. (2021). Effects of Bacillus subtilis and Bacillus licheniformis on growth performance, immunity, short chain fatty acid production, antioxidant capacity, and cecal microflora in broilers. Poultry Science, 100(9), 101358.
Zhang, T., Li, X., Li, J., Sun, F., & Duan, L. (2025). Gut microbiome-targeted therapies as adjuvant treatments in inflammatory bowel diseases: A systematic review and network meta-analysis. Journal of Gastroenterology and Hepatology, 40(1), 78–88.
Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons «Attribution» 4.0 License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.


