Current state of soil microbiota in the Zaporizhzhia region of Ukraine

  • V. Melnychuk Poltava State Agrarian University
  • V. Yevstafieva Poltava State Agrarian University
  • M. Bilan Dnipro State Agrarian and Economic University
  • V. Zazharskyi Dnipro State Agrarian and Economic University
  • N. Zazharska Dnipro State Agrarian and Economic University
  • P. Davydenko Dnipro State Agrarian and Economic University
  • V. Plys Dnipro State Agrarian and Economic University
  • I. Shapran State Environmental Inspectorate of the Southern District
  • V. Yakovenko Dnipro State Agrarian and Economic University
  • A. Zamaziy Poltava State Agrarian University
Keywords: fecal indicator bacteria, coli titer, perfringens titer, thermophilic bacteria, bacterial biodiversity, soil use.

Abstract

The destruction of the Kakhovka HPP led to large-scale changes in the natural ecosystems of the Zaporizhia and Kherson regions of Ukraine, including changes in the soil microbiome. T he research i n the territory of Zaporizhia Oblast revealed nat u ral, intensive phenomena of soil cover purification from organic matter contamination, including feces, occurring in the dra i nage zone formed as a result of the destruction of the dam. Sanitary state control allows us to assess the safety of soils for the environment and determine the possible impact on humans. Thus, a local contamination was revealed. The sanitary state of the soil was characterized by the presence of sanitary indicator microorganisms ( Escherichia coli , Enterococcus spp., Klebsiella spp., Enterobacter spp., Citrobacter spp. , and Clostridium perfringens ), which indicated fresh or old fecal contamination. The detection of thermophilic bacteria, Bacillus spp., and saprophytic fungi was correlated with the degree of organic matter tran s formation processes and stages of soil self-purification. In the soils in unsatisfactory sanitary condition, the coli titer the perfri n gens titer measured ≤ 0.9 and ≤ 0.009 , respectively . Pathogenic Salmonella spp. were not detected in any of the soil samples, yet Mycobacterium spp. were isolated. In the soils of the drainage zone of most of the studied transects, the presence of E. coli and sulfite-reducing bacteria was established. The results obtained can be used for further monitoring and control of the sanit a ry condition of soils affected by the destruction of the Kakhovka HPP in order to prevent the spread of pathogenic microorga n isms in natural ecosystems.

References

Alegbeleye, O., & Sant’Ana, A. S. (2023). Survival behavior of six enterotoxigenic Escherichia coli strains in soil and biochar-amended soils. Environmental Research, 223, 115443.

Ausec, L., Kraigher, B., & Mandic-Mulec, I. (2009). Differences in the activity and bacterial community structure of drained grassland and forest peat soils. Soil Biology and Biochemistry, 41(9), 1874–1881.

Beck, H. E., McVicar, T. R., Vergopolan, N., Berg, A., Lutsko, N. J., Dufour, A., Zeng, Z., Jiang, X., van Dijk, A. I. J. M., & Miralles, D. G. (2023). High-resolution (1 km) Köppen-Geiger maps for 1901–2099 based on constrained CMIP6 projections. Scientific Data, 10(1), 724.

Berg, G., Rybakova, D., Fischer, D., Cernava, T., Vergès, M.-C. C., Charles, T., Chen, X., Cocolin, L., Eversole, K., Corral, G. H., Kazou, M., Kinkel, L., Lange, L., Lima, N., Loy, A., Macklin, J. A., Maguin, E., Mauchline, T., McClure, R., Mitter, B., Ryan, M., Sarand, I., Smidt, H., Schelkle, B., Roume, H., Kiran, G. S., Selvin, J., de Souza, R. S. C., van Overbeek, L., Singh, B. K., Wagner, M., Walsh, A., Sessitsch, A., & Schloter, M. (2020). Microbiome definition re-visited: old concepts and new challenges. Microbiome, 8(1), 103.

Boer, W. de, Folman, L. B., Summerbell, R. C., & Boddy, L. (2005). Living in a fungal world: Impact of fungi on soil bacterial niche development. FEMS Microbiology Reviews, 29(4), 795–811.

Boichenko, S. V., Cherniak, L. M., Radomskaia, M. M., & Bondaruk, A. V. (2015). The problem of purification of natural waters contaminated by sewage petrochemicals products. Science-Based Technologies, 28(4), 353–357.

Bondar, O. B., Melnyk, E. E., Pogorelova, O. M., Bytsyura, L. O., & Holovatyuk, L. M. (2025). Analysis of the results of the impact of military actions on the environment and infrastructure of Ukraine. Scientific Bulletin of UNFU, 35(1), 60–67.

Borie, F., Rubio, R., & Morales, A. (2008). Arbuscular mycorrhizal fungi and soil aggregation. Revista de La Ciencia Del Suelo y Nutrición Vegetal, 8(2), 9–18.

Burns, A., & Ryder, D. S. (2001). Response of bacterial extracellular enzymes to inundation of floodplain sediments. Freshwater Biology, 46(10), 1299–1307.

Casteel, M. J., Sobsey, M. D., & Mueller, J. P. (2006). Fecal contamination of agricultural soils before and after hurricane-associated flooding in North Carolina. Journal of Environmental Science and Health, Part A, 41(2), 173–184.

Certini, G. (2005). Effects of fire on properties of forest soils: A review. Oecologia, 143(1), 1–10.

Chi, J., Fan, Y., Wang, L., Putnis, C. V., & Zhang, W. (2022). Retention of soil organic matter by occlusion within soil minerals. Reviews in Environmental Science and Biotechnology, 21(3), 727–746.

Chvaliuk, H., Hrubinko, V., Humeniuk, H., & Matsiuk, O. (2023). War destroying the ecology of Ukraine. Scientific Issue Ternopil Volodymyr Hnatiuk National Pedagogical University, Series: Biology, 82(4), 49–64.

Cools, D., Merckx, R., Vlassak, K., & Verhaegen, J. (2001). Survival of E. coli and Enterococcus spp. derived from pig slurry in soils of different texture. Applied Soil Ecology, 17(1), 53–62.

Dacenko, L. M. (Ed.). (2014). Fizychna heohrafia Zaporizkoyi oblasti [Physical geography of Zaporizhia Oblast]. Bohdan Khmelnytskyi Melitopol State Pedagogical University, Melitopol (in Ukrainian).

Dovhanenko, D. О., Yakovenko, V. M., Brygadyrenko, V. V., & Boyko, O. O. (2024a). Characteristic of the dried-up zone formed as a result of the breach of the Kahovka Dam. Biosystems Diversity, 32(2), 285–295.

Dovhanenko, D. О., Yakovenko, V. M., Brygadyrenko, V. V., & Boyko, O. O. (2024b). Complex characteristics of landscape components affected by the disaster at the Kahovka Hydropower Plant. Biosystems Diversity, 32(1), 174–182.

Dunn, P. H., Barro, S. C., & Poth, M. (1985). Soil moisture affects survival of microorganisms in heated chaparral soil. Soil Biology and Biochemistry, 17(2), 143–148.

Fatoba, D. O., Abia, A. L. K., Amoako, D. G., & Essack, S. Y. (2021). Rethinking manure application: Increase in multidrug-resistant Enterococcus spp. in agricultural soil following chicken litter application. Microorganisms, 9(5), 885.

Fierer, N., Bradford, M. A., & Jackson, R. B. (2007). Toward an ecological classification of soil bacteria. Ecology, 88(6), 1354–1364.

Garcha, S., Katyal, P., & Sharma, V. (2016). Microbial diversity in soil under different land use systems in sub-mountainous zone of Punjab. Journal of the Indian Society of Soil Science, 64(3), 271–275.

Ghazifard, A., Kasra-Kermanshahi, R., & Far, Z. E. (2001). Identification of thermophilic and mesophilic bacteria and fungi in Esfahan (Iran) municipal solid waste compost. Waste Management and Research, 19(3), 257–261.

Hapich, H., Novitskyi, R., Onopriienko, D., Dent, D., & Roubik, H. (2024). Water security consequences of the Russia–Ukraine war and the post-war outlook. Water Security, 21, 100167.

Isha, Tallapragada, S., & Lather, R. (2022). Effect of pesticides on crop, soil microbial flora and determination of pesticide residue in agricultural produce: A review. International Journal of Environment and Climate Change, 12(12), 38–56.

IUSS Working Group of World Reference Base for Soil Resources (2022). World reference base for soil resources. International soil classification system for naming soils and creating legends for soil maps. 4th edition. International Union of Soil Sciences, Vienna.

Jha, D. K., Sharma, G. D., & Mishra, R. R. (1992). Ecology of soil microflora and mycorrhizal symbionts in degraded forests at two altitudes. Biology and Fertility of Soils, 12(4), 272–278.

Karamushka, V., Boychenko, S., Kuchma, T., & Zabarna, O. (2022). Trends in the environmental conditions, climate change and human health in the Southern region of Ukraine. Sustainability, 14(9), 5664.

Kirk, J. L., Beaudette, L. A., Hart, M., Moutoglis, P., Klironomos, J. N., Lee, H., & Trevors, J. T. (2004). Methods of studying soil microbial diversity. Journal of Microbiological Methods, 58(2), 169–188.

Kong, L., Zhang, L., Wang, Y., & Huang, Z. (2023). Impact of ecological restoration on the physicochemical properties and bacterial communities in Alpine mining area soils. Microorganisms, 12(1), 41.

Kukurudziak, K. V., Bryhas, O. P., Tertyshna, O. V., & Revka, T. О. (2016). The sanitary-microbiological state of Central Forest-Steppe soils. Scientific Bulletin of UNFU, 26(7), 213–219.

Lawal, H. M., Salifu, U. M., Amapu, I. Y., & Atta, H. I. (2020). Diversity of microbes in soil aggregate fractions under different land-use in Northern Guinea Savanna, Nigeria. Fudma Journal of Sciences, 4(2), 510–518.

López, M. J., Jurado, M. M., López-González, J. A., Estrella-González, M. J., Martínez-Gallardo, M. R., Toribio, A., & Suárez-Estrella, F. (2021). Characterization of thermophilic lignocellulolytic microorganisms in composting. Frontiers in Microbiology, 12, 697480.

Lumibao, C. Y., & Liu, Y. (2024). Long-term contaminant exposure alters functional potential and species composition of soil bacterial communities in Gulf Coast prairies. Microorganisms, 12(7), 1460.

Marych, K., & Pohorilets, M. (2023). Legal responsibility for war crimes against the environment. Bulletin of Lviv Polytechnic National University, Series: Legal Sciences, 10(37), 279–286.

Melnychuk, V., Yevstafieva, V., Bilan, M., Zazharskyi, V., Zazharska, N., Davydenko, P., Shapran, I., & Slynko, V. (2024). Impact of military actions on the epizootic situation with the spread of rabies in animals in Kherson oblast. Regulatory Mechanisms in Biosystems, 15(4), 939–944.

Michuda, V. V., Volovyk, L. M., & Bondarenko, R. I. (2025). Environmental consequences of russia’s war against Ukraine. Innovate Pedagogy, 80, 135–138.

Nacke, H., Thürmer, A., Wollherr, A., Will, C., Hodac, L., Herold, N., Schöning, I., Schrumpf, M., & Daniel, R. (2011). Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils. PLoS One, 6(2), e17000.

Niu, B., Lei, T., Chen, Q., Shao, M., Yang, X., Jiao, H., Yang, Y., Guggenberger, G., & Zhang, G. (2023). pH: A core node of interaction networks among soil organo-mineral fractions. Environment International, 178, 108058.

Pepko, V. O. (2019). Sanitary and higienic assessment of soils and water supply sources at the deploy of the aviary household. Taurian Scientific Herald, 107, 217–222.

Pérez-Valera, E., Verdú, M., Navarro-Cano, J. A., & Goberna, M. (2020). Soil microbiome drives the recovery of ecosystem functions after fire. Soil Biology and Biochemistry, 149, 107948.

Plotnikov, O. (2024). Responsibility of the occupying power for ecocide on the occupied territories under the legislation of Ukraine and international law. Law of Ukraine, 3, 21–33.

Ponomarenko, O. M., Nykyforov, V. V., & Yakovenko, V. M. (2022). Chan-ges of chemical and micromorphological properties of Poltava region soils of Ukraine for the last 130 years. Ukrainian Geographical Journal, 1, 18–26.

Poruchynska, I. V.,& Slashchuk, A. M. (2025). Statistical analysis of berry growing in Ukraine. Ukrainian Journal of Natural Sciences, 11, 345–351.

Pospielov, S., Pospielova, G., Zezekalo, Y., Onipko, V., & Manachynskyi, O. (2025). Formation of pale purple coneflower (Echinacea pallida (Nutt.) Nutt.) seed productivity in the conditions of the Left-Bank Forest-Steppe of Ukraine. Scientific Progress and Innovations, 28(1), 68–74.

Premsuriya, J., Leerach, N., Laosena, P., & Hinthong, W. (2024). The effects of livestock grazing on physicochemical properties and bacterial communities of perlite-rich soil. PeerJ, 12, e18433.

Preston, C. M. (1995). Humus chemistry, genesis, composition and reactions. Soil Science, 159(5), 356.

Romashchenko, M., Faybishenko, B., Onopriienko, D., Hapich, H., Novitskyi, R., Dent, D., Saidak, R., Usatyi, S., & Roubik, H. (2025). Prospects for restoration of Ukraine’s irrigation system. Water International, 50(2), 104–120.

Runyon, E. H. (1959). Anonymous Mycobacteria in pulmonary disease. Medical Clinics of North America, 43(1), 273–290.

Shandrivska, O., & Pyzh, O. (2024). Study of the grain market of Ukraine in the conditions of war. Management and Entrepreneurship in Ukraine: The Stages of Formation and Problems of Development, 2024(1), 259–270.

Söderberg, K. H., Probanza, A., Jumpponen, A., & Bååth, E. (2004). The microbial community in the rhizosphere determined by community-level physiological profiles (CLPP) and direct soil- and cfu-PLFA techniques. Applied Soil Ecology, 25(2), 135–145.

Staley, C., Dunny, G. M., & Sadowsky, M. J. (2014). Environmental and animal-associated Enterococci. Advances in Applied Microbiology, 87, 147–186.

Streletskii, R., Astaykina, A., Krasnov, G., & Gorbatov, V. (2022). Changes in bacterial and fungal community of soil under treatment of pesticides. Agronomy, 12(1), 124.

Sun, S., Li, S., Avera, B. N., Strahm, B. D., & Badgley, B. D. (2017). Soil bacterial and fungal communities show distinct recovery patterns during forest ecosystem restoration. Applied and Environmental Microbiology, 83(14), e00966-17.

Tate, R. L. (1997). soil microbial diversity research: whither to now? Soil Science, 162(9), 605–606.

Tsyhanenko-Dziubenko, І., Kireitseva, H., Herasymchuk, О., Skyba, H., & Khomenko, С. (2024). anthropogenic impact of war on water resources: Analysis and potential recovery pathways. Problems of Chemistry and Sustainable Development, 3, 51–59.

Tugel, A. J., Lewandowski, A. M., & Happe-von Arb, D. (Eds.). (2000). Soil biology primer. Chapter 3: Soil bacteria. Soil and Water Conservation Society, Ankeny.

Ueda, K., Ohno, M., Yamamoto, K., Nara, H., Mori, Y., Shimada, M., Hayashi, M., Oida, H., Terashima, Y., Nagata, M., & Beppu, T. (2001). Distribution and diversity of symbiotic thermophiles, Symbiobacterium thermophilum and related bacteria, in natural environments. Applied and Environmental Microbiology, 67(9), 3779–3784.

Valério, E., Santos, M. L., Teixeira, P., Matias, R., Mendonça, J., Ahmed, W., & Brandão, J. (2022). Microbial source tracking as a method of determination of beach sand contamination. International Journal of Environmental Research and Public Health, 19(13), 7934.

Vashenko, I. (2018). Market of grains in Ukraine: Analysis of the modern state. Land Management, Cadastre and Land Monitoring, 3, 80–85.

Wagner, D., Eisenhauer, N., & Cesarz, S. (2015). Plant species richness does not attenuate responses of soil microbial and nematode communities to a flood event. Soil Biology and Biochemistry, 89, 135–149.

Wright, A. J., Ebeling, A., de Kroon, H., Roscher, C., Weigelt, A., Buchmann, N., Buchmann, T., Fischer, C., Hacker, N., Hildebrandt, A., Leimer, S., Mommer, L., Oelmann, Y., Scheu, S., Steinauer, K., Strecker, T., Weisser, W., Wilcke, W., & Eisenhauer, N. (2015). Flooding disturbances increase resource availability and productivity but reduce stability in diverse plant communities. Nature Communications, 6(1), 6092.

Yakovenko, V., & Zhukov, O. (2025). Morphology and classification of Chernozem modified by the intensive mammalian bioturbation. Pedosphere, in press.

Yakovenko, V., Gorban, V., Kotovych, O., Didur, O., & Poleva, J. (2025). Humus forms, earthworm bioturbation and soil organic carbon storage in Chernozems of the low-intensity land use of steppe zone of Ukraine. Geoderma Regional, 42, e00988.

Yoon, J.-H., Adhikari, M., Jeong, S. S., Lee, S. P., Kim, H. S., Lee, G. S., Park, D. H., Kim, H., & Yang, J. E. (2024). Microbial diversity of soils under different land use and chemical conditions. Applied Biological Chemistry, 67(1), 111.

Zinchuk, T., & Tkachuk, O. (2024). The conceptual approach to the export-import situationof the medicinal plant raw materials market. Agrosvit, 18, 29–38.

Published
2025-11-08
How to Cite
Melnychuk, V., Yevstafieva, V., Bilan, M., Zazharskyi, V., Zazharska, N., Davydenko, P., Plys, V., Shapran, I., Yakovenko, V., & Zamaziy, A. (2025). Current state of soil microbiota in the Zaporizhzhia region of Ukraine. Regulatory Mechanisms in Biosystems, 16(4), e25215. https://doi.org/10.15421/0225215

Most read articles by the same author(s)