The effect of some amino acids and natural materials on inhibiting the swarming motility of Proteus mirabilis
Abstract
Proteus mirabilis is a Gram negative bacteri um , which exhibit s swarming motility, and is characterized by rapid and coord i nated surface migration. Therefore it is considered a significant pathogen , a leading cause of catheter-associated urinary tract infection (CaUTI). In this research, the isolation and identification of Proteus mirabilis was accomplished from different clinical cases (22) urine, (7) blood, and (1) sample each for an ear discharge and a burn case. All of the samples were cultured primarily on both nutrient agar and MacConkey’s agar. After that, ordinary tests (cultural and cellular characteristics as well as biochemical tests) were carried out to diagnos e this bacterium . I n addition , molecular identification depending on the 16srRNA gene was also followed using the PCR technique after extraction of the DNA. Attempts to inhibit the swarming motility were made using six amino acids including (ala n ine, valine, aspartic acid , cystine, histidine, and tryptophan) cho sen randomly, as well as aqueous extraction of some natural materials , including corn silk ( Zea mays ), parsley ( Petroselinum crispum ), dried orange peel and ma l low ( Malva parviflora ), which were selected based on traditional remedies commonly prescribed to the general population by herbalists for the treatment of urinary tract infections. The phenotypic identification of Proteus mirabilis exhibited catalase pos i tive, oxidase negative, positive for urase production and this bacterium was able to ferment the lactose and glucose in Kligler medium. In addition, the molecular diagnosis represented by data from 16srRNA sequen c ing , which was analyzed by the N a tional Center for Biotechnology Information through Local Alignment Search Tool , helped to identify five strains of Proteus mirabilis from all samples, two of which were recorded in NCBI with accession number s (OR976487 and OR976486. The result s of the study of the impact of the amino acids on swarming motility of P. mirabilis demonstrate that the strains S3 and S4 exh i bited complete inhibition with all tested amino acids. Strain Ghmosu-1 was affected by all amino acids except valine, which had a minimal effect. Strain Ghsumo-2 showed complete inhibition with valine, alanine, aspartic acid, and cysteine, while histidine and tryptophan had no effect. Finally, strain L was the least affected, as its motility was not entirely inhibited but only slightly weakened by certain amino acids. For natural materials, the strongest substances that primarily inhibited the swarming were orange peels and mallow. P arsley came in the second rank because it i nhibited the movement in two strains only. H owever, the c orn s ilk material did not show any inhibitory effect on the swarming movement for any of the three strains. The natural co m pounds tested did not align with herbalist recommendations for treating urinary tract infections. Therefore, reliance on these co m pounds is discouraged, and physicians should remain the primary authority for prescribing appropriate medications.References
Allison, C., Lai, H., Gygi, D., & Hughes, C. (1993). Cell differentiation of Proteus mirabilis is initiated by glutamine, a specific chemoattractant for swarming cells. Molecular Microbiology, 8(1), 53–60.
Altaay, O. Y., & Al-Haaik, A. G. (2022). Histomorphometrical and histochemical postnatal development of cornea in indigenous rabbits. Iraqi Journal of Veterinary Sciences, 36(2), 291–296.
Altaey, O. Y., Hasan, A. A., & Alhaaik, A. G. (2025). Early-life development of spleen in white rabbit (Oryctolagus cuniculus): A morphometric and histochemical analysis. Veterinary Integrative Sciences, 23(1), 1–13.
Alzahrani, J., & Ghaleb, R. (2023). Advances in molecular techniques for the identification of Proteus species: PCR and genomic sequencing methods. Infection and Drug Resistance, 16, 1059–1070.
Bernier, S. P., Ha, D.-G., Khan, W., Merritt, J. H., & O’Toole, G. A. (2011). Modulation of Pseudomonas aeruginosa surface-associated group behaviors by individual amino acids through c-di-GMP signaling. Research in Microbiology, 162(7), 680–688.
Cappuccino, J. G., & Welsh, C. (2020). Microbiology. A laboratory manual. Pearson, London.
Chakkour, M., Hammoud, Z., Farhat, S., El Roz, A., Ezzeddine, Z., & Ghssein, G. (2024). Overview of Proteus mirabilis pathogenicity and virulence. Insights into the role of metals. Frontiers in Microbiology, 15, 1383618.
Eberl, L., Molin, S., & Givskov, M. (1999). Surface motility of Serratia liquefaciens MG1. Journal of Bacteriology, 181(6), 1703–1712.
Hezam, A. M., Yousif, M. G., & Mohammed, G. J. (2023). Detection of auxotroph’s methionine Proteus mirabilis from different clinical sources. IOP Conference Series: Earth and Environmental Science, 1215(1), 012065.
Ioannou, P., & Vougiouklakis, G. (2020). Infective endocarditis by Proteus species: A systematic review. Germs, 10(3), 229–239.
James, G. (2010). Universal bacterial identification by PCR and DNA sequencing of 16S rRNA gene. In: Schuller, M., Sloots, P. T., James, S. G., Halliday, L. C., & Carter, W. J. I. (Eds.). PCR for clinical microbiology. Springer, Dordrecht. Pp. 209–214.
Jose, R., & Singh, V. (2020). Swarming in bacteria: A tale of plasticity in motility behavior. Journal of the Indian Institute of Science, 100(3), 515–524.
Kasallis, S., Bru, J.-L., Chang, R., Zhuo, Q., & Siryaporn, A. (2023). Understanding how bacterial collectives organize on surfaces by tracking surfactant flow. Current Opinion in Solid State and Materials Science, 27(3), 101080.
Köhler, T., Curty, L. K., Barja, F., van Delden, C., & Pechère, J.-C. (2000). Swarming of Pseudomonas aeruginosa is dependent on cell-to-cell signaling and requires flagella and pili. Journal of Bacteriology, 182(21), 5990–5996.
Kotian, H. S., Abdulla, A. Z., Hithysini, K. N., Harkar, S., Joge, S., Mishra, A., Singh, V., & Varma, M. M. (2020). Active modulation of surfactant-driven flow instabilities by swarming bacteria. Physical Review E, 101(1), 012407.
Mohammad, G. A., & Al-Wattar, M. (2023). Effect of four plant extracts on opportunistic bacteria: Sphingomonas paucimobilis and Enterococcus faecium. Journal of Life and Bio Sciences Research, 4(2), 58–62.
Mohammad, G. A., Al-Ani, A. G., & Al-Taee, S. M. (2024). Assessing the common ancient traditions prescribed by herbalists for otitis media treatment. Malaysian Journal of Microbiology, 20(5), 614–622.
Nagara, Y., Takada, T., Nagata, Y., Kado, S., & Kushiro, A. (2017). Microscale spatial analysis provides evidence for adhesive monopolization of dietary nutrients by specific intestinal bacteria. PLoS One, 12(4), e0175497.
Nakamura, S., & Minamino, T. (2019). Flagella-driven motility of bacteria. Biomolecules, 9(7), 279.
Partridge, J. D. (2022). Surveying a swarm: Experimental techniques to establish and examine bacterial collective motion. Applied and Environmental Microbiology, 88(3), e01853-21.
Rather, P. N. (2005). Swarmer cell differentiation in Proteus mirabilis. Environmental Microbiology, 7(8), 1065–1073.
Rütschlin, S., & Böttcher, T. (2019). Inhibitors of bacterial swarming behavior. Chemistry, 26(5), 964–979.
Saleh, T. H., Hashim, S. T., Malik, S. N., & Al-Rubaii, B. A. L. (2020). The impact some of nutrients on swarming phenomenon and detection the responsible gene RsbA in clinical isolates of Proteus mirabilis. International Journal of Research in Pharmaceutical Sciences, 11(1), 437–444.
Sasirekha, B., M. Megha, D., S. Sharath, M., & Soujanya, R. (2014). Study on effect of different plant extracts on microbial biofilms. Asian Journal of Biotechnology, 7(1), 1–12.
Srinivasan, S., Kaplan, C. N., & Mahadevan, L. (2019). A multiphase theory for spreading microbial swarms and films. eLife, 8, e42697.
Talebi, A., Momtaz, H., & Tajbakhsh, E. (2023). Frequency distribution of virulence factors and antibiotic resistance genes in uropathogenic Proteus species isolated from clinical samples. Letters in Applied Microbiology, 76(2), ovac043.
Ulitzur, S. (1975). The mechanism of swarming of Vibrio alginolyticus. Archives of Microbiology, 104(1), 67–71.
Wasfi, R., Hamed, S. M., Amer, M. A., & Fahmy, L. I. (2020). Proteus mirabilis biofilm: Development and therapeutic strategies. Frontiers in Cellular and Infection Microbiology, 10, 414.
Yuan, F., Huang, Z., Yang, T., Wang, G., Li, P., Yang, B., & Li, J. (2021). Pathogenesis of Proteus mirabilis in catheter-associated urinary tract infections. Urologia Internationalis, 105(5–6), 354–361.
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